The Human Genome Project References

Doug Brutlag

September 24, 2007

  1. A User's Guide to the Human Genome. (2003). Nat Genet, 35 Suppl 1, 18-20.

  2. Arratia, R., Lander, E. S., Tavare, S., & Waterman, M. S. (1991). Genomic mapping by anchoring random clones: a mathematical analysis. Genomics, 11(4), 806-827.

  3. Benner, S. A. (2003). Interpretive proteomics--finding biological meaning in genome and proteome databases. Adv Enzyme Regul, 43, 271-359.

  4. Berry, R., Stevens, T. J., Walter, N. A., Wilcox, A. S., Rubano, T., Hopkins, J. A., et al. (1995). Gene-based sequence-tagged-sites (STSs) as the basis for a human gene map. Nat Genet, 10(4), 415-423.

  5. Cheung, V. G., Nowak, N., Jang, W., Kirsch, I. R., Zhao, S., Chen, X. N., et al. (2001). Integration of cytogenetic landmarks into the draft sequence of the human genome. Nature, 409(6822), 953-958.
  6. Dizikes, G. J. (1995). Update on the Human Genome Project. Clin Lab Med, 15(4), 973-988.

  7. Durand, P., Medigue, C., Morgat, A., Vandenbrouck, Y., Viari, A., & Rechenmann, F. (2003). Integration of data and methods for genome analysis. Curr Opin Drug Discov Devel, 6(3), 346-352.

  8. Finishing the euchromatic sequence of the human genome. (2004). Nature, 431(7011), 931-945**.

  9. Goldberg, P. W., Golumbic, M. C., Kaplan, H., & Shamir, R. (1995). Four strikes against physical mapping of DNA. J Comput Biol, 2(1), 139-152.

  10. Green, E. D., Mohr, R. M., Idol, J. R., Jones, M., Buckingham, J. M., Deaven, L. L., et al. (1991). Systematic generation of sequence-tagged sites for physical mapping of human chromosomes: application to the mapping of human chromosome 7 using yeast artificial chromosomes. Genomics, 11(3), 548-564.

  11. Green, P. (1997). Against a whole-genome shotgun. Genome Res, 7(5), 410-417.**

  12. Greenberg, D. S., & Istrail, S. (1995). Physical mapping by STS hybridization: algorithmic strategies and the challenge of software evaluation. J Comput Biol, 2(2), 219-273.

  13. Guyer, M. S., & Collins, F. S. (1995). How is the Human Genome Project doing, and what have we learned so far? Proc Natl Acad Sci U S A, 92(24), 10841-10848.

  14. Hubbard, T. J., Aken, B. L., Beal, K., Ballester, B., Caccamo, M., Chen, Y., et al. (2007). Ensembl 2007. Nucleic Acids Res, 35(Database issue), D610-617.

  15. Jasny, B. R., & Kennedy, D. (2001). The human genome. Science, 291(5507), 1153.**

  16. Kere, J., Nagaraja, R., Mumm, S., Ciccodicola, A., D'Urso, M., & Schlessinger, D. (1992). Mapping human chromosomes by walking with sequence-tagged sites from end fragments of yeast artificial chromosome inserts. Genomics, 14(2), 241-248.

  17. Kuhn, R. M., Karolchik, D., Zweig, A. S., Trumbower, H., Thomas, D. J., Thakkapallayil, A., et al. (2007). The UCSC genome browser database: update 2007. Nucleic Acids Res, 35(Database issue), D668-673.

  18. Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., et al. (2001). Initial sequencing and analysis of the human genome. Nature, 409(6822), 860-921.

  19. Lander, E. S., & Waterman, M. S. (1988). Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics, 2 (3), 231-239**.

  20. Levy, S., Sutton, G., Ng, P. C., Feuk, L., Halpern, A. L., Walenz, B. P., et al. (2007). The Diploid Genome Sequence of an Individual Human. PLoS Biol, 5(10), e254.**

  21. Loveland, J. (2005). VEGA, the genome browser with a difference. Brief Bioinform, 6(2), 189-193.

  22. Maglott, D., Ostell, J., Pruitt, K. D., & Tatusova, T. (2007). Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res, 35(Database issue), D26-31.

  23. McKusick, V. A. (1991). Current trends in mapping human genes. Faseb J, 5(1), 12-20.

  24. McPherson, J. D., Marra, M., Hillier, L., Waterston, R. H., Chinwalla, A., Wallis, J., et al. (2001). A physical map of the human genome. Nature, 409(6822), 934-94.

  25. Olivier, M., Aggarwal, A., Allen, J., Almendras, A. A., Bajorek, E. S., Beasley, E. M., et al. (2001). A high-resolution radiation hybrid map of the human genome draft sequence. Science, 291(5507), 1298-1302.

  26. Ouzounis, C. A., & Karp, P. D. (2002). The past, present and future of genome-wide re-annotation. Genome Biol, 3(2), COMMENT2001.

  27. Rodriguez-Tome, P., & Lijnzaad, P. (2001). RHdb: the Radiation Hybrid database. Nucleic Acids Res, 29(1), 165-166.

  28. Service, R. F. (2001). The human genome. Objection #1: big biology is bad biology. Science, 291(5507), 1182.**

  29. Service, R. F. (2001). The human genome. Objection #3: impossible to do. Science, 291(5507), 1186.**

  30. Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., Sutton, G. G., et al. (2001). The sequence of the human genome. Science, 291(5507), 1304-1351.**

  31. Vogel, G. (2001). The human genome. Objection #2: why sequence the junk? Science, 291(5507), 1184.**

  32. Warren, R. L., Varabei, D., Platt, D., Huang, X., Messina, D., Yang, S. P., et al. (2006). Physical map-assisted whole-genome shotgun sequence assemblies. Genome Res, 16(6), 768-775.

  33. Weber, J. L., & Myers, E. W. (1997). Human whole-genome shotgun sequencing. Genome Res, 7(5), 401-409.**

  34. Wheeler, D. L., Barrett, T., Benson, D. A., Bryant, S. H., Canese, K., Chetvernin, V., et al. (2007). Database resources of the National Center for Biotechnology Information. Nucleic Acids Res, 35(Database issue), D5-12.

  35. Wolfsberg, T. G., McEntyre, J., & Schuler, G. D. (2001). Guide to the draft human genome. Nature, 409(6822), 824-826.**

  36. Wolfsberg, T. G., McEntyre, J., & Schuler, G. D. (2001). Guide to the draft human genome. Nature, 409(6822), 824-826.

  37. Zhuo, D., Zhao, W. D., Wright, F. A., Yang, H. Y., Wang, J. P., Sears, R., et al. (2001). Assembly, annotation, and integration of UNIGENE clusters into the human genome draft. Genome Res, 11(5), 904-918.

** Last Updated September 23, 2007**